A decade of study on the condition of western Cuban coral reefs, with low human impact.

Background: The long-time study of coral reefs with low human impacts can provide information on the effects of regional pressures like climate change, and is an opportunity to document how these pressures are reflected in coral communities. An example of minimal local anthropogenic impacts are the Guanahacabibes coral reefs, located in the westernmost region of Cuba. The objectives of this study were: to evaluate the temporal variability of six benthic biological indicators of coral reefs, and to explore the possible relationship between predictive abiotic variables and biological response variables. Methods: Four coral reef sites were sampled between 2008 and 2017, to analyze biological indicators (living coral cover, fleshy algae index, coral species richness, coral species abundance, coral trait groups species abundance, Functional Reef Index). Seven abiotic variables (wave exposure, sea surface temperature, degree heating week, chlorophyll-a concentration, particulate organic carbon, photosynthetically available radiation, and the diffuse attenuation coefficient) were compiled between 2007 and 2016, from remote sensing datasets, to analyze their relationship with the biological indicators. Permanova statistical analysis was used to evaluate trends in biological variables between sites and years, and Routine Analysis Based on Linear Distances (DISTLM) was used to explore some dependencies between biotic and abiotic variables. Results: We found significant variability in the temporal analysis, with a decrease in living coral cover, a decline in the predominance of the branching and massive framework reef-building species, a decline in Orbicella species abundance, and an increase in the fleshy algae index. Some abiotic variables (average of degree heating weeks, standard deviation of the diffuse attenuation coefficient, average of the sea surface temperature, among others) significantly explained the variability of biological indicators; however, determination coefficients were low. Conclusions: Certain decrease in the functionality of the coral reef was appreciated, taking into account the predominance of secondary and nom-massive framework reef-building species in the last years. A weak association between abiotic and biological variables was found in the temporal analysis. The current scenario of the condition of the coral reefs seems to be regulated by the global effects of climate change, weakly associated effects, and in longer terms.

Dataset of coral reefs monitoring, Puerto Morelos, Mexico, 2019.

Noticeable within the Mexican Caribbean is the Arrecife de Puerto Morelos National Park (APMNP), a marine protected area established as an essential component for managing and protecting coral reefs. In June 2019, we conducted a survey in eight shallow reef sites of the APMNP with the purpose of applying a coral reef assessment method, based on biological indicators of the condition of both benthos and fish communities. In this paper we present tables with data of biological and ecological variables such as: benthos coverage, species composition and abundance of corals, abundance of urchins and coral recruits, bleaching, coral diseases and coral mortality percent, reef relief, and composition and abundance of key commercial and herbivorous fish species. The research article related to these databases was published in the journal Diversity with the title: Puerto Morelos coral reefs, current state and their classification by a scoring system.

Corrigendum to "Dataset of octocoral assemblages in fore reefs in the northwestern region of Cuba" [Data in Brief 31 (2020) 1-7/DIB-D-20-00391].

[This corrects the article DOI: 10.1016/j.dib.2020.105790.].

Dataset of octocoral assemblages in fore reefs in the northwestern region of Cuba.

This dataset accompanies "Spatio temporal variation in octocoral assemblages along a water quality gradient in the northwestern region of Cuba" [1]. Sampling units were quadrats of 1 m2 (each 1 x 1 m), positioned by a random-systematic design at 10 m depth on the rocky-coral substrate. The number of colonies of octocoral species in thirteen fore reefs was counted to determine the composition, richness and abundance (expressed as density) of octocorals for the period from 2008-2015. Density of six species that most influenced spatial variation of octocoral assemblage structure was compared [1]. Species richness of octocorals was determined in each reef and for the 2008-2015 period. The accumulated species richness was calculated based on 100 randomizations without replacement. This dataset can be used in meta-analysis studies on spatial variations of the structure of octocoral assemblages related to anthropogenic activities and climate variability in the Caribbean Sea, as well as, experimental studies on thresholds to specific pollutants.

Spatio temporal variation in octocoral assemblages along a water quality gradient in the northwestern region of Cuba.

Rivers are the main sources of nutrients to coastal zones. Therefore, the effects of water quality degradation on octocoral assemblages and their relationship with microbiological and physical-chemical variables were determined in reefs close to river basins in the northwestern region of Cuba. The evaluations were carried out in 1 m2 frames at a depth of 10 m in 13 fore reefs. The highest concentrations of the microbiological variables and hydrochemicals and the lowest horizontal visibility in the water column were detected in the reefs near the river basins. The lowest richness, diversity and octocoral density were related to higher concentrations of fecal coliform, total coliform and fecal streptococcal bacteria, sediment accumulation on the bottom and lower visibility. The structure of the octocoral assemblages varied significantly between reefs due to fecal organic pollution. Water quality deterioration in the reefs near the river basins has negatively affected the octocoral assemblages.

Diversidad de las comunidades de peces en dos áreas marinas protegidas del Caribe y su relación con el pez león / Diversity of native reef fish communities in two protected areas in the Caribbean Sea and its relationship to the invasive lionfish

Resumen El pez león (Pterois volitans) invadió la región del Caribe y tiene el potencial de alterar la composición y estructura de las comunidades de peces en los arrecifes coralinos. El objetivo de este estudio fue analizar los índices de diversidad en las comunidades de peces nativos en sitios invadidos por el pez león en dos áreas marinas protegidas (AMP) del Caribe y compararlos con datos previos a la invasión. En ambas AMP, Parque Nacional Guanahacabibes (PNG) en el occidente de Cuba y Parque Nacional Arrecifes de Xcalak (PNAX) en el S de Quintana Roo, se realizaron censos visuales de las especies de peces en hábitats durante las épocas de seca y lluvia del 2013-2015. Se evaluaron nueve sitios, mediante conteos estacionarios. Se registró mayor riqueza de especies en el PNG (43.47±5.14) que en el PNAX (40.22±4.96). No se observaron diferencias entre épocas en ninguna de las AMP. El pez león se ubicó entre las especies más abundantes del PNG. La abundancia media en el PNG (0.76 ± 1.25) fue mayor a la registrada en el PNAX (0.19±0.46). La diversidad disminuyó después de la llegada del pez león en un solo sitio del PNG y en dos sitios del PNAX, pero al parecer estos resultados están más asociados al efecto de la pesca que a la presencia del pez león. A partir de los resultados y asumiendo que los cambios en las comunidades de peces por el pez león podrían no detectarse aún, recomendamos seguir los monitoreos de los descriptores comunitarios para detectar cambios futuros en las comunidades de peces.

Abstract Lionfish (Pterois volitans) invaded the Caribbean region with the potential to alter the composition and structure of native coral reef fish communities. The objective of this study was to analyze the diversity indices of these fish communities potentially affected by lionfish predation and to compare with pre-invasion data. The study was undertaken in two Caribbean marine protected areas (MPAs): Guanahacabibes National Park (PNG) in W Cuba and Xcalak Reefs National Park (PNAX) in S Quintana Roo. We carried out visual censuses of fish species in reef habitats during the dry and rainy seasons of the period 2013-2015. For this, nine sites were defined and evaluated using stationary counts. Our results showed higher species richness (43.47 ± 5.14) and mean abundance (0.76 ± 1.25) in PNG than in PNAX (40.22 ± 4.96, 0.19 ± 0.46, respectively). Diversity decreased after the arrival of lionfish in a single site of PNG and in two sites of the PNAX, but apparently, these results are more related to the fishing activity effect than to the lionfish presence. Based on the results and assuming that changes in the native fish communities by lionfish may not yet be detected, we recommend to continue the monitoring community descriptions in order to detect future changes in native fish communities. Rev. Biol. Trop. 66(1): 189-203. Epub 2018 March 01.

Coral communities condition in varying wave exposure: the gulf of Cazones, Cuba / Condición de comunidades coralinas con diferente exposición al oleaje: El Golfo de Cazones, Cuba

Abstract Wave exposure can influence community structure and distribution of shallow coral reefs, by affecting organisms both directly and indirectly. To assess the current stony coral community condition under different degrees of wave exposure at a marine protected area of the Gulf of Cazones (SW Cuba), two expeditions were carried out in May 2010 and June 2012. Four sampling sites were sampled at reef crests (1.5 m deep), and twelve at fore-reefs, at 10, 15 and 20 m deep in four geographic locations. Live coral cover, species richness and composition, colony density, and maximum diameter were assessed using the AGRRA 2001 methodology. Multivariate and non-parametric statistics were applied to compare sites. The coral community structure within reef crests was not homogenous. The observed variability of indicators apparently was determined by great coral mortality events resulting from natural disturbances that occurred in the past (hurricanes, bleaching and diseases). Forereef coral communities displayed better condition and lower coral mortality than reef crests. Species richness and coral composition varied, while multivariate and statistical methods did not reveal site grouping with regard to wave exposure. The remaining biological condition indicators were similar among sites, except in the most exposed one, where coral cover and coral size were slightly lower. Wave exposure in the gulf of Cazones seemed not to have a significant influence on differences in condition and structure of the assessed coral communities. Rev. Biol. Trop. 64 (1): 78-93. Epub 2016 March 01.

ResumenEl oleaje es una perturbación natural que puede inferir en la estructura y condición de los arrecifes de coral someros, afectando los organismos directa e indirectamente. Para evaluar la condición de comunidades de corales con diferente exposición al oleaje, se realizaron dos expediciones al Área Marina Protegida del Golfo de Cazones durante mayo 2010 y junio 2012. Se escogieron cuatro arrecifes (localidades) ubicados en posiciones diferentes del golfo. Se ubicaron cuatro sitios en la zona de cresta (1.5 m de profundidad) y 12 en la zona de arrecife frontal (en cuatro localidades a 10, 15 y 20 m de profundidad) donde se replicaron transectos lineales (10 m de largo) de muestreo. Se evaluó la cobertura de coral vivo, riqueza y composición por especies, densidad y diámetro máximo de las colonias mediante la metodología AGRRA 2001. Para la comparación entre sitios se aplicaron métodos evaluativos multivariados y análisis estadísticos no paramétricos. La estructura y condición de la comunidad de corales en las crestas fue distinta pero la variabilidad observada parece responder a grandes eventos de mortalidad producto de huracanes, blanqueamientos y enfermedades del pasado. La condición de los arrecifes frontales fue más favorable observándose menor mortalidad coralina. La riqueza y composición por especies fue variable y los métodos estadísticos y multivariados no definieron grupos de sitios con similitud respecto a la exposición al oleaje. Los demás indicadores biológicos de condición fueron parecidos entre sitios, excepto en el más expuesto al oleaje, donde la cobertura y la talla de los corales fueron ligeramente inferiores. En general, la diferente influencia del oleaje dentro del golfo de Cazones, parece no afectar significativamente la estructura y condición de las comunidades coralinas.

[Stony coral recruitment in coral reefs at different distances from pollution sources in Habana, Cuba]. / Reclutamiento de corales pétreos en arrecifes coralinos a diferentes distancias de fuentes de contaminación en La Habana, Cuba.

The effect of pollution on coral recruitment has been insufficiently studied. This research deals with coral recruitment in coastal areas and aimed to determine the variations of density and dominant species of corals recruits in sites at different distances from pollution sources. The composition and structure of stony coral (scleractinian and milleporids) recruit associations were characterized in the fringing reef of Western Havana, Cuba. This reef is influenced by urban pollution from the Almendares River and a sewage outlet located at its mouth. Four sites were sampled on the upper fore reef escarpment at 10m deep every three months between July 2007 and May 2008. A 25cm side quadrat was used to determine the density and taxonomic composition of recruits smaller than 3cm in diameter. Sampling units were placed following a random-systematic pattern. The mean density of recruits was determined both at assemble and species level. Bifactoral ANOVA tests were applied to compare mean densities at both sampling sites and dates. Student-Newman-Keuls test was applied to compare pairs of means. Cluster and nMDS analyses were applied to evaluate between site similarities. The predominant species was Siderastrea siderea followed by S. radians and Porites astreoides. Recruit densities were similar among La Puntilla, Calle 16 and Acuario sites. Lower densities were always found in Malec6n. Significant differences in mean stony recruit densities were found both between sites and sampling dates. The statistic analysis did not show significant spatial-temporal interactions. Malec6n, the most polluted site, showed the lowest recruit density and the greater presence of species considered as indicators of organic pollution, sedimentation and abrasion. The density of recruit species was higher in October 2007 and lower in May 2008, and it was apparently influenced by reproduction and cold front seasons, respectively. The higher dominance and abundance of S. siderea, S. radians and P. astreoides recruits were apparently due to their high reproductive potential and resistance to disturbances. The identity of dominant species was apparently related to distance from major pollution sources. We highly recommended the replication of this research in other areas of the greater Caribbean region to test the generality of present results and to compare among areas. Future research should take into account the influence of other environmental factors, along with an appraisal of recruit species tolerance to these factors, to better ponder the effect of urban pollution on recruitment. Areas with well assessed pollution regimes are recommended for research.

Reclutamiento de corales pétreos en arrecifes coralinos a diferentes distancias de fuentes de contaminación en La Habana, Cuba / Stony coral recruitment in coral reefs at different distances from pollution sources in Habana, Cuba

The effect of pollution on coral recruitment has been insufficiently studied. This research deals with coral recruitment in coastal areas and aimed to determine the variations of density and dominant species of corals recruits in sites at different distances from pollution sources. The composition and structure of stony coral (scleractinian and milleporids) recruit associations were characterized in the fringing reef of Western Havana, Cuba. This reef is influenced by urban pollution from the Almendares River and a sewage outlet located at its mouth. Four sites were sampled on the upper fore reef escarpment at 10m deep every three months between July 2007 and May 2008. A 25cm side quadrat was used to determine the density and taxonomic composition of recruits smaller than 3cm in diameter. Sampling units were placed following a random-systematic pattern. The mean density of recruits was determined both at assemble and species level. Bifactoral ANOVA tests were applied to compare mean densities at both sampling sites and dates. Student-Newman-Keuls test was applied to compare pairs of means. Cluster and nMDS analyses were applied to evaluate between site similarities. The predominant species was Siderastrea siderea followed by S. radians and Porites astreoides. Recruit densities were similar among La Puntilla, Calle 16 and Acuario sites. Lower densities were always found in Malecón. Significant differences in mean stony recruit densities were found both between sites and sampling dates. The statistic analysis did not show significant spatial-temporal interactions. Malecón, the most polluted site, showed the lowest recruit density and the greater presence of species considered as indicators of organic pollution, sedimentation and abrasion. The density of recruit species was higher in October 2007 and lower in May 2008, and it was apparently influenced by reproduction and cold front seasons, respectively. The higher dominance and abundance of S. siderea, S. radians and P. astreoides recruits were apparently due to their high reproductive potential and resistance to disturbances. The identity of dominant species was apparently related to distance from major pollution sources. We highly recommended the replication of this research in other areas of the greater Caribbean region to test the generality of present results and to compare among areas. Future research should take into account the influence of other environmental factors, along with an appraisal of recruit species tolerance to these factors, to better ponder the effect of urban pollution on recruitment. Areas with well assessed pollution regimes are recommended for research.

El efecto de la contaminación sobre el reclutamiento ha sido insuficientemente estudiado. Este trabajo trata el tema del reclutamiento en sitios ubicados a diferentes distancias de dos importantes fuentes de contaminación. Se caracterizó la composición y estructura de las asociaciones de reclutas de corales pétreos (escleractinios y milepóridos) al oeste de la Ciudad de La Habana, Cuba. Esta área está influenciada por la contaminación urbana del río Almendares y del emisario submarino construido en su desembocadura. El objetivo de esta investigación fue determinar las variaciones en la densidad y predominio de las especies de reclutas, en sitios ubicados a diferentes distancias de fuentes de contaminación, en distintas épocas de un año. Se muestreó cada tres meses entre julio 2007- mayo 2008. Se escogieron cuatro sitios de muestreo cerca del borde superior del escarpe del arrecife frontal a 10m de profundidad. Se utilizó un marco cuadrado de 25cm de lado de forma aleatoria-sistémica para determinar la densidad y composición taxonómica de reclutas de corales pétreos (colonias menores de 3cm). Para comparar las densidades medias entre sitios y fechas de muestreo se aplicó un análisis de varianza bifactorial. Para comparar los pares de densidades medias se empleó la prueba de Student-Newman-Keuls. La aplicación de un análisis Clasificación Numérica Jerárquica Aglomerativa (Cluster Analysis) y uno de ordenamiento por Escalado Multidimensional no Métrico (nMDS) mostró una distribución en la que los sitios quedaron agrupados en función de sus distancias de las fuentes contaminantes. Predominó Siderastrea sidérea seguida por Siderastrea radians y Porites asteroides. Durante el año de muestreo, las densidades de reclutas fueron similares entre La Puntilla, Calle 16 y Acuario. Las menores densidades se observaron siempre en Malecón. Se encontraron diferencias significativas entre las densidades medias de los sitios, así como entre de las distintas fechas de muestreo. El análisis de variancia bifactorial no mostró interacción significativa espacio-tiemporal. Malecón, sitio más contaminado, presentó menor reclutamiento y mayor presencia de especies consideradas indicadoras de contaminación orgánica, sedimentación y abrasión. Las densidades fueron mayores en Octubre 2007 y menores en Mayo 2008, al parecer influenciados por las épocas de reproducción y la acción de los frentes fríos respectivamente. El mayor predominio y abundancia de reclutas de S. siderea, S. radians y P. astreoides parece responder a sus elevados potenciales reproductivos y altas resistencias a disturbios. La identidad de las especies dominantes estuvo relacionada aparentemente con las distancias de las principales fuentes de contaminación. Se recomienda replicar esta investigación en otros lugares de la región del Caribe para probar la generalidad de estos resultados. Estudios futuros debieran tener en cuenta la influencia de otros factores ambientales, junto con una valoración de la tolerancia de las especies de reclutas a estos factores, para ponderar mejor el efecto de la contaminación urbana sobre el reclutamiento.